bilby_pipe.process_bilby_mcmc

This executable will process an ongoing bilby_mcmc analyses to produce a combined result. The executable is assumed to be run from the submit directory (e.g., where the .ini file is) and on the submit machine.

Note

If your analysis uses HTCondor file transfer (transfer-files=True), the resume files required for processing will not exist on the submit machine until the job has completed. You will need to use bilby_pipe_htcondor_sync to first sync the files to the submit machine, then run bilby_pipe_process_bilby_mcmc.

Attributes

RESULT_SUBDIR

Classes

Dummy
RobustUnpickler	python's Unpickler extended to interpreter sessions and more types

Functions

glob_and_filter_files(args, globpath)
get_resume_file_paths(args, label)
extract_label_from_filename(filename)
check_unique_file(files, ftype)
find_data_dump_file(args)
find_config(args)
get_output_fname(outdir_result, resume_files[, ...])
update_convergence_inputs(args, ptsampler)
create_parser()
get_args()
process_sampler(ptsampler, analysis, outdir, args)
main()
extract_chain_data(ptsampler)
create_convergence_plot(chain_data, result_fname)

Module Contents

bilby_pipe.process_bilby_mcmc.RESULT_SUBDIR = 'result'

class bilby_pipe.process_bilby_mcmc.Dummy

class bilby_pipe.process_bilby_mcmc.RobustUnpickler(*args, **kwds)

Bases: dill.Unpickler

python’s Unpickler extended to interpreter sessions and more types

find_class(module, name)

Return an object from a specified module.

If necessary, the module will be imported. Subclasses may override this method (e.g. to restrict unpickling of arbitrary classes and functions).

This method is called whenever a class or a function object is needed. Both arguments passed are str objects.

bilby_pipe.process_bilby_mcmc.glob_and_filter_files(args, globpath)

bilby_pipe.process_bilby_mcmc.get_resume_file_paths(args, label)

bilby_pipe.process_bilby_mcmc.extract_label_from_filename(filename)

bilby_pipe.process_bilby_mcmc.check_unique_file(files, ftype)

bilby_pipe.process_bilby_mcmc.find_data_dump_file(args)

bilby_pipe.process_bilby_mcmc.find_config(args)

bilby_pipe.process_bilby_mcmc.get_output_fname(outdir_result, resume_files, naming_method='datetime', extension='json')

bilby_pipe.process_bilby_mcmc.update_convergence_inputs(args, ptsampler)

bilby_pipe.process_bilby_mcmc.create_parser()

bilby_pipe.process_bilby_mcmc.get_args()

bilby_pipe.process_bilby_mcmc.process_sampler(ptsampler, analysis, outdir, args)

bilby_pipe.process_bilby_mcmc.main()

bilby_pipe.process_bilby_mcmc.extract_chain_data(ptsampler)

bilby_pipe.process_bilby_mcmc.create_convergence_plot(chain_data, result_fname)