falsealarm.h

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/*
*  Copyright (C) 2010, 2011, 2014 Evan Goetz
*
*  This program is free software; you can redistribute it and/or modify
*  it under the terms of the GNU General Public License as published by
*  the Free Software Foundation; either version 2 of the License, or
*  (at your option) any later version.
*
*  This program is distributed in the hope that it will be useful,
*  but WITHOUT ANY WARRANTY; without even the implied warranty of
*  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*  GNU General Public License for more details.
*
*  You should have received a copy of the GNU General Public License
*  along with with program; see the file COPYING. If not, write to the
*  Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
*  MA  02110-1301  USA
*/
 
#ifndef __FALSEALARM_H__
#define __FALSEALARM_H__
 
#include "TwoSpectTypes.h"
 
struct gsl_probR_pars {
  const TwoSpectTemplate *template;
  const REAL4VectorAligned *ffplanenoise;
  const REAL4VectorAligned *fbinaveratios;
  const REAL4 threshold;
  const UserInput_t *inputParams;
  const gsl_rng *rng;
  INT4 errcode;
};
 
farStruct *createfarStruct( void );
void destroyfarStruct( farStruct *farstruct );
INT4 estimateFAR( farStruct *output, const TwoSpectTemplate *template, const UINT4 trials, const REAL8 thresh, const REAL4VectorAligned *ffplanenoise, const REAL4VectorAligned *fbinaveratios );
INT4 numericFAR( farStruct *output, const TwoSpectTemplate *template, const REAL8 thresh, const REAL4VectorAligned *ffplanenoise, const REAL4VectorAligned *fbinaveratios, const UserInput_t *inputParams, const gsl_rng *rng, const INT4 method );
REAL8 probR( const TwoSpectTemplate *template, const REAL4VectorAligned *ffplanenoise, const REAL4VectorAligned *fbinaveratios, const REAL8 R, const UserInput_t *params, const gsl_rng *rng, INT4 *errcode );
REAL8 gsl_probR( const REAL8 R, void *pars );
REAL8 gsl_dprobRdR( const REAL8 R, void *pars );
void gsl_probRandDprobRdR( const REAL8 R, void *pars, REAL8 *probabilityR, REAL8 *dprobRdR );
 
#endif