ppe_init.h

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/*
*  Copyright (C) 2014 Matthew Pitkin
*
*  This program is free software; you can redistribute it and/or modify
*  it under the terms of the GNU General Public License as published by
*  the Free Software Foundation; either version 2 of the License, or
*  (at your option) any later version.
*
*  This program is distributed in the hope that it will be useful,
*  but WITHOUT ANY WARRANTY; without even the implied warranty of
*  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*  GNU General Public License for more details.
*
*  You should have received a copy of the GNU General Public License
*  along with with program; see the file COPYING. If not, write to the
*  Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
*  MA  02110-1301  USA
*/
 
/**
 * \file
 * \ingroup lalpulsar_bin_HeterodyneSearch
 * \author Matthew Pitkin, John Veitch, Colin Gill
 *
 * \brief Header file for the initialisation functions for the parameter estimation code for known pulsar
 * searches using the nested sampling algorithm.
 */
 
#ifndef _PPE_INIT_H
#define _PPE_INIT_H
 
#include "pulsar_parameter_estimation_nested.h"
#include "ppe_models.h"
#include "ppe_utils.h"
#include "ppe_readdata.h"
 
#ifdef __cplusplus
extern "C" {
#endif
 
void nested_sampling_algorithm_wrapper( LALInferenceRunState *runState );
void setup_live_points_array_wrapper( LALInferenceRunState *runState );
void initialise_algorithm( LALInferenceRunState *runState );
void setup_lookup_tables( LALInferenceRunState *runState, LALSource *source );
void add_initial_variables( LALInferenceVariables *ini, PulsarParameters *pars );
void initialise_prior( LALInferenceRunState *runState );
void initialise_proposal( LALInferenceRunState *runState );
void add_correlation_matrix( LALInferenceVariables *ini,
                             LALInferenceVariables *priors, REAL8Array *corMat,
                             LALStringVector *parMat );
void sum_data( LALInferenceRunState *runState );
void LogSampleToFile( LALInferenceVariables *algorithmParams, LALInferenceVariables *vars );
void LogSampleToArray( LALInferenceVariables *algorithmParams, LALInferenceVariables *vars );
REAL8Vector **parse_gmm_means( CHAR *meanstr, UINT4 npars, UINT4 nmodes );
gsl_matrix **parse_gmm_covs( CHAR *covstr, UINT4 npars, UINT4 nmodes );
CHAR *get_bracketed_string( CHAR *dest, const CHAR *bstr, int openbracket, int closebracket );
void initialise_threads( LALInferenceRunState *state, INT4 nthreads );
 
#ifdef __cplusplus
}
#endif
 
#endif /* _PPE_INIT_H */